Plant Genome

GeneCAD: Plant Genome Annotation from DNA with a Foundation Model
GeneCAD: Plant Genome …

GeneCAD at a glance GeneCAD is a sequence-only annotation pipeline that turns genome sequence into complete, biologically coherent plant gene models (GFF3) using a DNA foundation model (PlantCAD2), a ModernBERT head, and a chromosome-wide CRF—no RNA-seq, no proteomics, no homology inputs needed. …

PlantCaduceus
PlantCaduceus

Revolutionizing Cross-Species Plant Genomics 🌿 PlantCaduceus is an advanced platform designed to model plant genomes across species at single nucleotide resolution. By leveraging pre-trained DNA language models, PlantCaduceus aims to capture the evolutionary conservation of plant genomes, enabling …